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Nucleic Acids Research·· 4 小时前精选AI 评分78

InterPro 发布 110.0 版本,新增深度学习方法 InterPro-N 与 InterProScan 6

InterPro: the protein sequence classification resource in 2027

AI 导读

蛋白质序列分类资源 InterPro 发布 110.0 版本,新增深度学习方​​法 InterPro-N,将 UniProtKB 的序列覆盖度提升到 90% 以上。InterPro 整合多个成员数据库的预测模型(signature),把序列归入蛋白家族并预测结构域和功能位点,注释覆盖数亿条序列,并可映射到 Gene Ontology、PDBe 和 AlphaFold 蛋白结构数据库。

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来源:Nucleic Acids Research · doi.org

推荐理由

InterPro 110.0 用深度学习把 UniProtKB 覆盖度推到 90% 以上,并给出 InterProScan 6 与 MCP 服务的迁移信息。

论文摘要 · 原文

InterPro (https://www.ebi.ac.uk/interpro) is a freely accessible resource for the classification of protein sequences. It integrates predictive models, known as signatures, from multiple member databases to classify sequences into families and to predict the presence of domains and functionally important sites. The InterPro database provides annotations for hundreds of millions of sequences, ensuring extensive coverage of UniProtKB, the standard repository of protein sequences, and includes mapping to several other major resources, such as Gene Ontology, the Protein Data Bank in Europe (PDBe), and the AlphaFold Protein Structure Database. In this publication we report on the status of InterPro (version 110.0), detailing new developments in the database, its associated web interface, and software. Notable updates include InterPro-N, a deep-learning method that increases sequence coverage of UniProtKB to over 90%; the transition from InterProScan 5 to the completely re-engineered InterProScan 6; the integration of structure-based domain classifications and predicted structures from AlphaFold; a redesigned protein viewer offering a concise summary view; and a new Model Context Protocol (MCP) server that allows AI assistants to query InterPro programmatically. Over the past two years, 9484 new InterPro entries have been created, bringing the total to 54 922. InterPro data, software and tools are freely available.