RNAactDrug 2.0 发布,扩展多组学药敏关联与单细胞数据
RNAactDrug 2.0: an updated resource for systematically exploring molecular features associated with drug sensitivity across multi-omics datasets
RNAactDrug 2.0 发布,在原有基础上大幅扩充了药物敏感性与分子特征关联的数据规模和功能。数据库收录约 30 000 种药物、38 908 个 RNA 分子和 22 800 375 条药物-RNA 关联,覆盖表达、拷贝数变异(CNV)、突变和甲基化四个分子层。新增整合 TCGA 33 种癌症类型的 11 099 例病例,以及来自 200 多个 scRNA-seq 数据集、覆盖 34 种癌症类型和 38 种组织的约 380 万个细胞,用于分析细胞类型特异性模式和瘤内异质性。
来源:Nucleic Acids Research · doi.org
RNAactDrug 2.0 (available at https://bio-bigdata.hrbmu.edu.cn/RNAactDrug or https://bio-datamining.hrbmu.edu.cn/RNAactDrug) is an updated resource for systematically exploring molecular features associated with drug sensitivity across multi-omics datasets. We have updated the RNAactDrug 2.0 database with significantly expanded data and improved features, including (i) ∼30 000 drugs, 38 908 RNA molecules, and 22 800 375 drug–RNA associations from large-scale pharmacogenomic databases, covering four molecular layers: expression, copy number variation (CNV), mutation, and methylation; (ii) 11 099 cases from The Cancer Genome Atlas across 33 cancer types are integrated to support clinical and pan-cancer analyses of drug sensitivity-associated RNA features; (iii) ∼3.8 million cells from >200 single-cell RNA sequencing datasets, spanning 34 cancer types and 38 tissues, enable analysis of cell type-specific patterns and intratumoral heterogeneity; (iv) 26 440 enhancers and 788 444 drug-enhancer associations, combined with potential target prediction, provide an exploratory epigenetic regulatory dimension; (v) enhanced search and browsing functionalities, together with seven tools for functional annotation, pan-cancer analysis, tumor microenvironment profiling, single-cell trajectory and CNV analysis, and enhancer-related analyses. In summary, RNAactDrug 2.0 is a crucial resource for the multi-omics dissection of drug sensitivity-associated molecules, providing important support for the discovery of drug resistance biomarkers and the advancement of personalized therapeutic strategies.